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Comment: pathview - multiple states
by
Guido Hooiveld
★
4.1k
According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★
28k
You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example:
```
library(scRNAseq)
X <- fetchData…
Comment: lfcShrink and alpha value
by
cropero
•
0
Thank you so much!
Would that be equivalent to perform `res <- results(dds, contrast = c("conditions", "wild_type_114_2_no_carbon", "wild_t…
Comment: pathview - multiple states
by
Philippine
•
0
Thank you! Here a subset of genes that really works with "ame04145".
data <- data.frame(
EntrezID = c(100577548, 100577764, 406…
Comment: pathview - multiple states
by
Guido Hooiveld
★
4.1k
A quick comment after I copied/pasted your code: when using `geneList1` in the 3rd code chunk I do **not** get a nice plot... I rather got …
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